Zuckerman Institute

Research output

Research output per year 1960 1972 1979 1982 1983 1986 2003 2005 2006 2013 2014 2017 2024 2025

• 34326 Citations
• 102 h-index
• 159 Article
• 73 Comment/debate
• 17 Review article
• 5 Editorial
• 13 More
  • 4 Letter
  • 3 Chapter
  • 3 Conference contribution
  • 2 Short survey
  • 1 Conference article

Research output per year

Research output per year

Search results

• 2023

  A Generative Neighborhood-Based Deep Autoencoder with an Extended Loss Function for Robust Imbalanced Classification

  Troullinou, E., Tsagkatakis, G., Losonczy, A., Poirazi, P. & Tsakalides, P., 2023, Conference Record of the 57th Asilomar Conference on Signals, Systems and Computers, ACSSC 2023. Matthews, M. B. (ed.). IEEE Computer Society, p. 1015-1019 5 p. (Conference Record - Asilomar Conference on Signals, Systems and Computers).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Deep Autoencoder 100%
  • World Application 50%
  • Classification Models 50%
  • Generative Adversarial Networks 50%
  • Deep Learning Model 50%
  1 Citation (Scopus)

• Erratum: Postingestive Modulation of Food Seeking Depends on Vagus-Mediated Dopamine Neuron Activity (Neuron (2020) 106(5) (778–788.e6), (S0896627320302166), (10.1016/j.neuron.2020.03.009))

  Fernandes, A. B., Alves da Silva, J., Almeida, J., Cui, G., Gerfen, C. R., Costa, R. M. & Oliveira-Maia, A. J., Feb 15 2023, In: Neuron. 111, 4, p. 595 1 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Dopamine 100%
  • Modulation 100%
  1 Citation (Scopus)

• Erratum: Low-dimensional dynamics for working memory and time encoding (Proceedings of the National Academy of Sciences of the United States of America (2020) 117 (23021–23032) DOI: 10.1073/pnas.1915984117)

  Cueva, C. J., Saez, A., Marcos, E., Genovesio, A., Jazayeri, M., Romo, R., Salzman, C. D., Shadlen, M. N. & Fusi, S., Mar 10 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 11, e2302618120.

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Proceedings 100%
  • Dynamics 100%
  • USA 100%
  • Working Memory 100%
  • 4 Iodo 2,5 Dimethoxyamphetamine 100%
• 2024

  Abstract representations emerge in human hippocampal neurons during inference

  Courellis, H. S., Minxha, J., Cardenas, A. R., Kimmel, D. L., Reed, C. M., Valiante, T. A., Salzman, C. D., Mamelak, A. N., Fusi, S. & Rutishauser, U., Aug 22 2024, In: Nature. 632, 8026, p. 841-849 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Abstract Representation 100%
  • Hippocampus 100%
  • Neural Representation 50%
  • Reasoning Task 50%
  • Ventral Temporal Cortex 50%
  4 Citations (Scopus)

• A mathematical theory of relational generalization in transitive inference

  Lippl, S., Kay, K., Jensen, G., Ferrera, V. P. & Abbott, L. F., Jul 9 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 28, e2314511121.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Behavioral Pattern 100%
  • Anomalous Behavior 100%
  • Representation Learning 100%
  • Neural Network 100%
  • Ridge Regression 100%
  4 Citations (Scopus)

• A Method for Treating Significant Conformational Changes in Alchemical Free Energy Simulations of Protein-Ligand Binding

  Liao, J., Sergeeva, A. P., Harder, E. D., Wang, L., Sampson, J. M., Honig, B. & Friesner, R. A., 2024, (Accepted/In press) In: Journal of Chemical Theory and Computation.

  Research output: Contribution to journal › Article › peer-review

  • Conformational Change 100%
  • Conformation 100%
  • Ligand Binding 100%
  • Protein Ligand 100%
  1 Citation (Scopus)

• Cortical control of eye movements

  Rutler, O., Driscoll, C., Stella, S. E., Persaud, S. & Goldberg, M. E., Jan 1 2024, Encyclopedia of the Human Brain, Second Edition: Volumes 1-5. Elsevier, p. V1-666-V1-680

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Eye Movement 100%
  • Saccade 66%
  • Smooth Pursuit 33%
  • Oculomotor System 33%

• Emergent neural dynamics and geometry for generalization in a transitive inference task

  Kay, K., Biderman, N., Khajeh, R., Beiran, M., Cueva, C. J., Shohamy, D., Jensen, G., Wei, X. X., Ferrera, V. P. & Abbott, L. F., Apr 2024, In: PLoS Computational Biology. 20, 4 April, e1011954.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Inference Task 100%
  • Neural Network 100%
  • Behavior (Neuroscience) 100%
  • Working Memory 66%
  • Dependent Behavior 33%
  4 Citations (Scopus)

• Erratum: Correction: Reach adaption to a visuomotor gain with terminal error feedback involves reinforcement learning (PloS one (2022) 17 6 DOI: 10.1371/journal.pone.0269297)

  Ikegami, T., Randall Flanagan, J. & Wolpert, D. M., 2024, In: PLoS One. 19, 8, p. e0308510

  Research output: Contribution to journal › Comment/debate › peer-review

  Open Access

  • Reinforcement Learning 100%
  • 2,5-Dimethoxy-4-iodoamphetamine 100%
  • 4 Iodo 2,5 Dimethoxyamphetamine 100%

• HCN1 hyperpolarization-activated cyclic nucleotide–gated channels enhance evoked GABA release from parvalbumin-positive interneurons

  Buss, E. W., Lofaro, O. M., Barnett, A., Leroy, F., Santoro, B., Siegelbaum, S. A. & Bock, T., Oct 15 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 42, e2319246121.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Parvalbumin 100%
  • Interneuron 100%
  • Gamma-Aminobutyric Acid 100%
  • HCN1 100%
  • Presynaptic Terminal 20%
  1 Citation (Scopus)

• Hue selectivity from recurrent circuitry in Drosophila

  Christenson, M. P., Sanz Diez, A., Heath, S. L., Saavedra-Weisenhaus, M., Adachi, A., Nern, A., Abbott, L. F. & Behnia, R., Jun 2024, In: Nature Neuroscience. 27, 6, p. 1137-1147 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Electron Microscopy 100%
  • Optic Lobe 100%
  • Connectomics 100%
  4 Citations (Scopus)

• Network-based elucidation of colon cancer drug resistance mechanisms by phosphoproteomic time-series analysis

  Rosenberger, G., Li, W., Turunen, M., He, J., Subramaniam, P. S., Pampou, S., Griffin, A. T., Karan, C., Kerwin, P., Murray, D., Honig, B., Liu, Y. & Califano, A., Dec 2024, In: Nature Communications. 15, 1, 3909.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Phosphoproteomics 100%
  • Colon 100%
  • Drug Resistance 100%
  • Signaling Protein 50%
  • Cancer Cell 50%
  3 Citations (Scopus)

• Vivien Chevaleyre (1973-2024)

  Castillo, P. E., Desarménien, M. G. & Siegelbaum, S. A., May 1 2024, In: Neuron. 112, 9, p. 1387-1389 3 p.

  Research output: Contribution to journal › Article › peer-review

• ZEPPI: Proteome-scale sequence-based evaluation of protein–protein interaction models

  Zhao, H., Petrey, D., Murray, D. & Honig, B., May 21 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 21, e2400260121.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Proteome 100%
  • Interactome 50%
  • Sequence Alignment 50%
  • Escherichia coli 50%
  • Coevolution 50%
  2 Citations (Scopus)
• 2025

  An emerging view of neural geometry in motor cortex supports high-performance decoding

  Perkins, S. M., Amematsro, E. A., Cunningham, J., Wang, Q. & Churchland, M. M., Feb 3 2025, In: eLife. 12

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Decoding Performance 100%
  • Computer Interface 100%
  • Machine Learning 100%
  • Learning System 100%
  • Motor Cortex 100%
  1 Citation (Scopus)

• StyleTTS: A Style-Based Generative Model for Natural and Diverse Text-to-Speech Synthesis

  Li, Y. A., Han, C. & Mesgarani, N., 2025, (Accepted/In press) In: IEEE Journal on Selected Topics in Signal Processing.

  Research output: Contribution to journal › Article › peer-review

  • Speech Synthesis 100%
  • Generative Model 100%
  • Text To Speech 100%
  • Baseline Model 20%
  • Data Augmentation 20%

• Understanding the neural code of stress to control anhedonia

  Xia, F., Fascianelli, V., Vishwakarma, N., Ghinger, F. G., Kwon, A., Gergues, M. M., Lalani, L. K., Fusi, S. & Kheirbek, M. A., Jan 16 2025, In: Nature. 637, 8046, p. 654-662 9 p., 2419.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Basolateral Amygdala 100%
  • Anhedonia 100%
  • Behavior (Neuroscience) 40%
  • Individual Differences 20%
  • Posttraumatic Stress Disorder 20%
  2 Citations (Scopus)